SMTL ID : 9gig.1

NMDA bound to compound 387

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 12 residues within 4Å: Chain A: H.87, S.113, L.114, T.115, R.120, G.171, S.172, T.173, E.174, Y.213, D.214, Y.244 17 PLIP interactions: 12 interactions with chain A, 5 Ligand-Ligand interactions Hydrophobic interactions: A:Y.213 Hydrogen bonds: A:T.115, A:T.115, A:S.172, A:T.173, A:D.214, E.1, E.1, E.1, E.1 Water bridges: A:G.171, A:S.172, A:T.173, A:Y.244, E.1 Salt bridges: A:H.87, A:R.120

1 x 01: (2~{R})-2-azanyl-3-[[3-(5-ethyl-3-methyl-1,2-oxazol-4-yl)-5-fluoranyl-phenyl]carbonylamino]propanoic acid

01.2: 21 residues within 4Å: Chain A: V.266, G.267 Chain B: F.91, P.123, L.124, T.125, I.126, N.127, R.130, Q.143, G.144, L.145, S.178, S.179, V.180, Y.183, W.222, D.223, F.245, S.247, F.249 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.125, B:L.145, B:Y.183, B:F.245, A:V.266 Hydrogen bonds: B:T.125, B:T.125, B:S.179, B:V.180, B:D.223 Water bridges: B:D.223 Salt bridges: B:R.130 pi-Stacking: B:F.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ascic, E. et al., Advancements in NMDA Receptor-Targeted Antidepressants: From d-Cycloserine Discovery to Preclinical Efficacy of Lu AF90103. J.Med.Chem. (2024)

Release Date

2024-11-27

Peptides

Glutamate receptor: A
Isoform 1 of Glutamate receptor ionotropic, NMDA 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor

Isoform 1 of Glutamate receptor ionotropic, NMDA 1

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