SMTL ID : 9giu.1

Cryo-EM structure of human SLC45A4 in detergent

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

7 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.1: 7 residues within 4Å: Chain A: R.506, M.509, R.510, L.513, I.673, I.676 Ligands: Y01.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.509, A:L.513, A:L.513, A:L.513, A:I.673, A:I.676 Salt bridges: A:R.506, A:R.510, A:R.510 Y01.2: 6 residues within 4Å: Chain A: I.100, L.104, V.494, R.495, W.498 Ligands: Y01.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.104, A:V.494, A:W.498, A:W.498, A:W.498 Salt bridges: A:R.495 Y01.3: 9 residues within 4Å: Chain A: S.115, W.116, L.124, C.127, V.128, F.242, V.246, A.247, F.251 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.116, A:L.124, A:L.124, A:V.128, A:F.242, A:V.246, A:A.247, A:F.251 Y01.5: 4 residues within 4Å: Chain A: A.108, F.122, A.125, G.129 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.108, A:F.122, A:A.125 Y01.6: 7 residues within 4Å: Chain A: V.603, V.607, N.613, Y.615, V.616, V.619, T.620 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.603, A:V.607, A:Y.615, A:Y.615, A:V.616, A:V.616, A:V.619 Hydrogen bonds: A:N.613 Y01.7: 6 residues within 4Å: Chain A: I.567, V.614, Y.615, M.618, V.619, S.622 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.567, A:I.567, A:Y.615, A:Y.615, A:M.618, A:V.619, A:V.619 Hydrogen bonds: A:Y.615 Y01.8: 5 residues within 4Å: Chain A: L.213, W.218, T.221, F.222, I.241 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.213, A:W.218, A:W.218, A:F.222, A:I.241 Hydrogen bonds: A:F.222

1 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.4: 10 residues within 4Å: Chain A: A.135, N.139, A.142, I.143, A.146, F.227, R.228, Q.232, F.235, F.236 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.135, A:Q.232, A:F.235, A:F.235, A:F.236 Hydrogen bonds: A:Q.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markusson, S. et al., Cryo-EM structure of human SLC45A4 in detergent. To Be Published

Release Date

2025-07-30

Peptides

Solute carrier family 45 member 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 45 member 4