SMTL ID : 9giy.1

Structure of the human mitochondrial pyruvate carrier inhibited by mitoglitazone

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.79 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x LO7: Mitoglitazone(Non-covalent)

LO7.1: 16 residues within 4Å: Chain A: Y.64, F.68, F.71, V.75, L.82, H.86 Chain B: A.36, F.42, K.49, W.82, Y.85, I.89, N.93, L.96, N.100 Ligands: 01.2 16 PLIP interactions: 10 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:A.36, B:F.42, B:F.42, B:W.82, B:L.96, A:F.71, A:V.75, A:L.82 Hydrogen bonds: B:Y.85, B:N.100, A:Y.64, A:Y.64 pi-Stacking: B:W.82, B:W.82, B:Y.85, A:F.71

1 x 01: Mitoglitazone (R-form)

01.2: 14 residues within 4Å: Chain A: Y.64, F.68, F.71, L.82, H.86 Chain B: F.42, K.49, W.82, Y.85, I.89, N.93, L.96, N.100 Ligands: LO7.1 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.42, B:F.42, B:L.96, A:F.71, A:F.71 Hydrogen bonds: B:Y.85, B:N.100, A:Y.64, A:Y.64 pi-Stacking: B:W.82, B:W.82, B:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sichrovsky, M. et al., Molecular basis of pyruvate transport and inhibition of the human mitochondrial pyruvate carrier. Sci Adv (2025)

Release Date

2025-05-07

Peptides

Mitochondrial pyruvate carrier 1-like protein: A
Mitochondrial pyruvate carrier 2: B
Macrobody,Maltose/maltodextrin-binding periplasmic protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Mitochondrial pyruvate carrier 1-like protein

Mitochondrial pyruvate carrier 2

Macrobody,Maltose/maltodextrin-binding periplasmic protein

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