SMTL ID : 9gj1.1

NMDA bound to compound 339

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 13 residues within 4Å: Chain A: E.15, H.87, S.113, L.114, T.115, R.120, G.171, S.172, T.173, E.174, Y.213, D.214, Y.244 16 PLIP interactions: 12 interactions with chain A, 4 Ligand-Ligand interactions Hydrophobic interactions: A:Y.213 Hydrogen bonds: A:T.115, A:T.115, A:S.172, A:T.173, A:D.214, E.1, E.1, E.1, E.1 Water bridges: A:G.171, A:G.171, A:T.173, A:Y.244 Salt bridges: A:H.87, A:R.120

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: I.238, T.241 Chain B: F.65, F.140, K.141, Y.142, H.271, M.276, E.277, D.280, R.285 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.241, B:K.141, B:D.280 Water bridges: A:T.241, B:Y.142

1 x 01: (2~{R})-2-azanyl-3-[(7-methylthieno[3,2-b]pyridin-2-yl)carbonylamino]propanoic acid

01.3: 19 residues within 4Å: Chain B: F.91, P.123, L.124, T.125, R.130, Q.143, G.144, L.145, S.178, S.179, V.180, Y.183, W.222, D.223, F.244, F.245, R.246, S.247, F.249 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:T.125, B:L.145, B:L.145, B:L.145, B:Y.183, B:F.245, B:F.245 Hydrogen bonds: B:P.123, B:T.125, B:T.125, B:S.179, B:V.180, B:D.223, B:S.247 Water bridges: B:D.223 Salt bridges: B:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ascic, E. et al., Advancements in NMDA Receptor-Targeted Antidepressants: From d-Cycloserine Discovery to Preclinical Efficacy of Lu AF90103. J.Med.Chem. (2024)

Release Date

2024-11-27

Peptides

Glutamate receptor: A
Isoform 1 of Glutamate receptor ionotropic, NMDA 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor

Isoform 1 of Glutamate receptor ionotropic, NMDA 1

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