SMTL ID : 9gle.2 (1 other biounit)

Jumonji domain-containing protein 2A with crystallization epitope mutations A91T:T93S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION

NI.1: 3 residues within 4Å: Chain A: H.189, E.191, H.277 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.189, A:E.191, A:H.277, H2O.2, H2O.4, H2O.6

2 x SO4: SULFATE ION

SO4.2: 2 residues within 4Å: Chain A: K.90, K.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.91 Salt bridges: A:K.90, A:K.91 SO4.3: 4 residues within 4Å: Chain A: E.215, K.218, R.219, R.222 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.222

1 x ZN: ZINC ION

ZN.4: 7 residues within 4Å: Chain A: C.235, F.238, H.241, C.307, S.308, C.309, R.310 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.235, A:H.241, A:C.307, A:C.309

1 x EDO: 1,2-ETHANEDIOL

EDO.5: 2 residues within 4Å: Chain A: R.30, E.353 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.30, A:E.353, A:E.353 Water bridges: A:E.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairhead, M. et al., A fast, parallel method for efficiently exploring crystallization behaviour of large numbers of protein variants. To be published

Release Date

2024-09-18

Peptides

Lysine-specific demethylase 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lysine-specific demethylase 4A

Related Entries With Identical Sequence