SMTL ID : 9gn8.1

Crystal Structure of UFC1 E149D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.66, F.68, E.85 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.85 Water bridges: A:R.66, A:R.66, A:R.66

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 5 residues within 4Å: Chain A: W.30, V.31, L.34, K.62, E.63 No protein-ligand interaction detected (PLIP) FMT.3: 2 residues within 4Å: Chain A: A.4, H.122 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.1, A:A.4 FMT.4: 2 residues within 4Å: Chain A: T.120, H.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.121, A:H.122, A:H.122

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: K.110, I.117, C.118, W.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.110, A:C.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, M. et al., UFC1 reveals the multifactorial and plastic nature of oxyanion holes in E2 conjugating enzymes. Nat Commun (2025)

Release Date

2025-05-07

Peptides

Ubiquitin-fold modifier-conjugating enzyme 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Ubiquitin-fold modifier-conjugating enzyme 1