SMTL ID : 9gnr.1

Cryo-EM structure of Sporosarcina pasteurii urease inhibited by NBPTO

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 7 residues within 4Å: Chain C: H.137, K.220, H.222, H.249, H.275 Ligands: NI.2, 2PA.3 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.249, C:H.275 NI.2: 6 residues within 4Å: Chain C: H.137, H.139, K.220, D.363 Ligands: NI.1, 2PA.3 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.137, C:H.139, C:D.363

1 x 2PA: DIAMIDOPHOSPHATE(Non-covalent)

2PA.3: 13 residues within 4Å: Chain C: H.137, H.139, A.170, K.220, H.222, H.249, H.275, G.280, D.363, A.366, M.367 Ligands: NI.1, NI.2 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.366, C:A.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mazzei, L. et al., Exploring the conformational space of the mobile flap in Sporosarcina pasteurii urease by cryo-electron microscopy. Int.J.Biol.Macromol. (2024)

Release Date

2025-07-23

Peptides

Urease subunit gamma: A
Urease subunit beta: B
Urease subunit alpha: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Urease subunit gamma

Urease subunit beta

Urease subunit alpha

Related Entries With Identical Sequence