SMTL ID : 9gob.1

Structure of the F-tractin-F-actin complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.20 Å

Oligo State

hetero-5-1-mer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: D.10, G.12, S.13, L.15, K.17, G.155, D.156, G.181, R.209, K.212, E.213, G.300, G.301, T.302, M.304, Y.305, K.335 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.10, A:S.13, A:D.156, A:D.156, A:K.212, A:G.301 Salt bridges: A:K.17, A:K.17 pi-Stacking: A:Y.305 ADP.3: 18 residues within 4Å: Chain C: D.10, G.12, S.13, L.15, K.17, G.155, D.156, G.181, R.209, K.212, E.213, G.300, G.301, T.302, M.304, Y.305, K.335 Ligands: MG.4 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:S.13, C:D.156, C:D.156, C:K.212, C:G.301 Salt bridges: C:K.17, C:K.17 pi-Stacking: C:Y.305 ADP.5: 18 residues within 4Å: Chain D: D.10, G.12, S.13, L.15, K.17, G.155, D.156, G.181, R.209, K.212, E.213, G.300, G.301, T.302, M.304, Y.305, K.335 Ligands: MG.6 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:D.10, D:S.13, D:D.156, D:D.156, D:K.212, D:G.301 Salt bridges: D:K.17, D:K.17 pi-Stacking: D:Y.305 ADP.7: 18 residues within 4Å: Chain E: D.10, G.12, S.13, L.15, K.17, G.155, D.156, G.181, R.209, K.212, E.213, G.300, G.301, T.302, M.304, Y.305, K.335 Ligands: MG.8 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:D.10, E:S.13, E:D.156, E:D.156, E:K.212, E:G.301 Salt bridges: E:K.17, E:K.17 pi-Stacking: E:Y.305 ADP.9: 18 residues within 4Å: Chain F: D.10, G.12, S.13, L.15, K.17, G.155, D.156, G.181, R.209, K.212, E.213, G.300, G.301, T.302, M.304, Y.305, K.335 Ligands: MG.10 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:D.10, F:S.13, F:D.156, F:D.156, F:K.212, F:G.301 Salt bridges: F:K.17, F:K.17 pi-Stacking: F:Y.305

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.10, Q.136, D.153 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain C: D.10, Q.136 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain D: Q.136, D.153 Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain E: D.10, Q.136 Ligands: ADP.7 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain F: Q.136, D.153 Ligands: ADP.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shatskiy, D. et al., Structure of the F-tractin-F-actin complex. To be published

Release Date

2025-01-22

Peptides

Actin, alpha skeletal muscle: ACDEF
Inositol-trisphosphate 3-kinase A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
A

D
E

E
B

F
D

B
F

Actin, alpha skeletal muscle

Inositol-trisphosphate 3-kinase A

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