SMTL ID : 9gou.1

Cryo-EM structure of acylaminoacyl-peptidase in complex with dichlorvos

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 01: dimethyl hydrogen phosphite

01.1: 6 residues within 4Å: Chain A: G.509, S.587, H.588, W.628, R.677, H.707 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.509, A:H.588 Salt bridges: A:H.707 01.2: 6 residues within 4Å: Chain B: G.509, S.587, H.588, W.628, R.677, H.707 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.509, B:H.588 01.3: 6 residues within 4Å: Chain C: G.509, S.587, H.588, W.628, R.677, H.707 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.509, C:H.588 01.4: 6 residues within 4Å: Chain D: G.509, S.587, H.588, W.628, R.677, H.707 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.509, D:H.588 Salt bridges: D:H.707

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiss-Szeman, A.J. et al., Ligand binding Pro-miscuity of acylpeptide hydrolase, structural analysis of a detoxifying serine hydrolase. Protein Sci. (2025)

Release Date

2025-10-22

Peptides

Acylamino-acid-releasing enzyme: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acylamino-acid-releasing enzyme

Related Entries With Identical Sequence