SMTL ID : 9gp4.1

Jumonji domain-containing protein 2A with crystallization epitope mutations Q953E:A958D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: H.15, Y.21, F.96, E.97, D.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.97, A:D.98 EDO.2: 5 residues within 4Å: Chain A: F.38, D.40, S.42, W.73, Y.79 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.42, A:S.42 Water bridges: A:D.40, A:D.40 EDO.3: 4 residues within 4Å: Chain A: Q.70, V.78, Y.79, G.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.70 EDO.4: 5 residues within 4Å: Chain A: S.44, N.46, L.47, W.73, T.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.46 EDO.5: 3 residues within 4Å: Chain A: Q.55, D.56, F.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.56 Water bridges: A:S.54

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: K.16, S.100, Q.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.101 Water bridges: A:K.16, A:K.16 Salt bridges: A:K.16 SO4.7: 4 residues within 4Å: Chain A: V.26, R.27, Q.93, Q.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairhead, M. et al., A fast, parallel method for efficiently exploring crystallization behaviour of large numbers of protein variants. To be published

Release Date

2024-10-16

Peptides

Lysine-specific demethylase 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 4A