SMTL ID : 9grx.1

NDH-PSI-LHCI supercomplex from S. oleracea

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
29 x BCR: BETA-CAROTENE(Non-covalent)
24 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)
2 x 01: 4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl alpha-maltoside
12 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
1 x PQ9: 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE(Non-covalent)
7 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)(Covalent)
144 x CLA: CHLOROPHYLL A(Covalent)(Non-covalent)
3 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
1 x CL0: CHLOROPHYLL A ISOMER(Covalent)
2 x PQN: PHYLLOQUINONE(Non-covalent)
9 x CHL: CHLOROPHYLL B(Non-covalent)(Covalent)
8 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Introini, B. et al., Cryo-EM structure of the NDH-PSI-LHCI supercomplex from Spinacia oleracea. Nat.Struct.Mol.Biol. (2025)
Release Date
2025-02-12
Peptides
Photosynthetic NDH subunit of lumenal location 1, chloroplastic: A
Photosynthetic NDH subunit of subcomplex B 1, chloroplastic: B
Photosynthetic NDH subunit of subcomplex B 2, chloroplastic: C
Photosynthetic NDH subunit of subcomplex B 3, chloroplastic: D
Photosynthetic NDH subunit of subcomplex B 4, chloroplastic: E
Photosynthetic NDH subunit of subcomplex B 5, chloroplastic: F
Photosynthetic NDH subunit of lumenal location 2, chloroplastic: G
Photosynthetic NDH subunit of lumenal location 3, chloroplastic: H
peptidylprolyl isomerase: I
Peptidyl-prolyl cis-trans isomerase: J
NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic: K
NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic: L
NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic: M
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic: N
NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic: O
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic: P
NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic: Q
NAD(P)H-quinone oxidoreductase subunit H, chloroplastic: R
NAD(P)H-quinone oxidoreductase subunit I, chloroplastic: S
NAD(P)H-quinone oxidoreductase subunit J, chloroplastic: T
NAD(P)H-quinone oxidoreductase subunit K, chloroplastic: U
NAD(P)H-quinone oxidoreductase subunit L, chloroplastic: V
NAD(P)H-quinone oxidoreductase subunit M, chloroplastic: W
NAD(P)H-quinone oxidoreductase subunit N, chloroplastic: X
NAD(P)H-quinone oxidoreductase subunit O, chloroplastic: Y
NAD(P)H-quinone oxidoreductase subunit U, chloroplastic: Z
Photosystem I P700 chlorophyll a apoprotein A1: 0
Photosystem I P700 chlorophyll a apoprotein A2: 1
Photosystem I iron-sulfur center: 2
Photosystem I reaction center subunit II, chloroplastic: 3
Photosystem I reaction center subunit IV, chloroplastic: 4
Photosystem I reaction center subunit III, chloroplastic: 5
Photosystem I reaction center subunit V, chloroplastic: 6
Photosystem I reaction center subunit VI, chloroplastic: 7
Photosystem I reaction center subunit VIII: 8
Photosystem I reaction center subunit IX: 9
PSI-K: a
Photosystem I reaction center subunit XI, chloroplastic: b
Chlorophyll a-b binding protein, chloroplastic: c
Chlorophyll a-b binding protein, chloroplastic: d
Chlorophyll a-b binding protein, chloroplastic: e
Chlorophyll a-b binding protein, chloroplastic: f
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
2
D
3
E
4
F
5
G
6
H
7
I
8
J
9
K
A
L
B
M
C
N
D
O
E
P
F
Q
G
R
H
S
I
T
J
U
K
V
L
W
M
X
N
Y
O
Z
U
0
a
1
b
2
c
3
d
4
e
5
f
6
g
7
h
8
i
9
j
a
k
b
l
c
w
d
x
e
y
f
z
Membrane
We predict this structure to be a membrane protein.

Photosynthetic NDH subunit of lumenal location 1, chloroplastic

Photosynthetic NDH subunit of subcomplex B 1, chloroplastic

Photosynthetic NDH subunit of subcomplex B 2, chloroplastic

Photosynthetic NDH subunit of subcomplex B 3, chloroplastic

Photosynthetic NDH subunit of subcomplex B 4, chloroplastic

Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

Photosynthetic NDH subunit of lumenal location 2, chloroplastic

Photosynthetic NDH subunit of lumenal location 3, chloroplastic

peptidylprolyl isomerase

Peptidyl-prolyl cis-trans isomerase

NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic

NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

NAD(P)H-quinone oxidoreductase subunit I, chloroplastic

NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

NAD(P)H-quinone oxidoreductase subunit L, chloroplastic

NAD(P)H-quinone oxidoreductase subunit M, chloroplastic

NAD(P)H-quinone oxidoreductase subunit N, chloroplastic

NAD(P)H-quinone oxidoreductase subunit O, chloroplastic

NAD(P)H-quinone oxidoreductase subunit U, chloroplastic

Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit II, chloroplastic

Photosystem I reaction center subunit IV, chloroplastic

Photosystem I reaction center subunit III, chloroplastic

Photosystem I reaction center subunit V, chloroplastic

Photosystem I reaction center subunit VI, chloroplastic

Photosystem I reaction center subunit VIII

Photosystem I reaction center subunit IX

PSI-K

Photosystem I reaction center subunit XI, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Related Entries With Identical Sequence

2o01.1