SMTL ID : 9gtu.1

Collagen VI alpha 1, 2, 3 heterotrimer recombinant C terminal region. Local refinement.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 9 residues within 4Å: Chain A: R.199, Q.228, I.229, N.230, W.274, S.286, D.287, S.490, V.492 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.199 NAG-NAG-FUC.2: 6 residues within 4Å: Chain B: H.353, N.354, L.355, T.356, A.357, E.360 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.349, A.350, S.351, M.352 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.349, A:A.350, A:S.351, A:S.351 NAG.4: 4 residues within 4Å: Chain B: H.373, G.410, N.411, D.412 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.373, B:N.411, B:N.411

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godwin, A.R.F. et al., Collagen VI microfibril structure reveals mechanism for molecular assembly and clustering of inherited pathogenic mutations. Nat Commun (2025)

Release Date

2025-08-20

Peptides

Collagen alpha-3(VI) chain: A
Collagen alpha-2(VI) chain: B
Collagen alpha-1(VI) chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

Collagen alpha-3(VI) chain

Collagen alpha-2(VI) chain

Collagen alpha-1(VI) chain