SMTL ID : 9gty.2 (1 other biounit)

RIPK1 in complex with AZ"320

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x RCM: (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione(Non-covalent)

RCM.1: 16 residues within 4Å: Chain A: M.86, L.89, V.94, V.95, K.96, L.97, M.111, L.148, V.153, H.155, I.173, A.174, D.175, L.178, S.180, F.181 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.89, A:V.94, A:L.97, A:L.148 Hydrogen bonds: A:V.95, A:D.175, A:S.180, A:S.180

1 x 01: 7-[4-[3-(methylsulfonylmethyl)azetidin-1-yl]sulfonylphenyl]quinoline

01.2: 13 residues within 4Å: Chain A: L.42, D.43, V.50, L.52, I.62, M.111, E.112, Y.113, M.114, E.115, G.117, L.164, L.176 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.50, A:I.62, A:I.62, A:L.164, A:L.176 Hydrogen bonds: A:M.114

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: A.146, H.149, E.226, V.230, T.296, F.297, P.298 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soday, L. et al., Discovery and Validation of a Novel Class of Necroptosis Inhibitors Targeting RIPK1. Acs Chem.Biol. (2025)

Release Date

2025-07-16

Peptides

Receptor-interacting serine/threonine-protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Receptor-interacting serine/threonine-protein kinase 1

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