SMTL ID : 9gub.1 (1 other biounit)

SARS-CoV-2 Mac1 in complex with MCD-628

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x 01: (2~{S})-3-(1~{H}-indol-3-yl)-2-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)propanoic acid

01.1: 14 residues within 4Å: Chain A: A.22, D.23, I.24, A.39, G.49, V.50, A.53, L.127, A.130, G.131, I.132, F.133, A.155, F.157 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.39, A:V.50, A:I.132, A:F.133, A:F.157 Hydrogen bonds: A:I.24, A:A.130, A:F.157 Water bridges: A:L.127, A:D.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfannenstiel, J.J. et al., Identification of a series of pyrrolo-pyrimidine-based SARS-CoV-2 Mac1 inhibitors that repress coronavirus replication. Mbio (2025)

Release Date

2025-06-11

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Papain-like protease nsp3

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