- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.5: 4 residues within 4Å:- Chain A: A.60, M.65, D.125, S.166
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.60, A:A.60, A:S.166
NA.17: 5 residues within 4Å:- Chain A: Y.132, T.136, K.137, T.172, H.174
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.132, A:T.172, A:H.174
- 1 x 01: 7-[(3~{S},4~{S},6~{R})-1-[(2~{S})-2-azanyl-3-(1~{H}-indol-3-yl)propanoyl]-4-methyl-4,6-bis(oxidanyl)azepan-3-yl]-1,3-dimethyl-purine-2,6-dione
01.9: 8 residues within 4Å:- Chain A: K.24, C.25, D.26, L.27, Y.30, K.137, V.139, E.173
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:Y.30, A:Y.30
- Hydrogen bonds: A:D.26, A:L.27, A:Y.30, A:K.137
- pi-Stacking: A:Y.30, A:Y.30
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
SAM.16: 20 residues within 4Å:- Chain A: N.43, Y.47, G.71, A.72, G.73, S.74, P.80, G.81, D.99, L.100, N.101, G.113, D.114, C.115, D.130, M.131, Y.132, D.133, F.149, K.170
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:N.43, A:G.73, A:G.81, A:L.100, A:N.101, A:D.114, A:C.115, A:Y.132
- Salt bridges: A:H.69, A:D.130
- 2 x ZN: ZINC ION(Non-covalent)
ZN.19: 4 residues within 4Å:- Chain B: C.75, C.78, H.84, C.91
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.75, B:C.78, B:H.84, B:C.91
ZN.20: 4 residues within 4Å:- Chain B: C.118, C.121, C.129, C.131
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.118, B:C.121, B:C.129, B:C.131
- 1 x IMD: IMIDAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kremling, V. et al., Crystal structures of SARS-CoV-2 methyltransferase nsp10-16 with Cap0-site binders. To Be Published
- Release Date
- 2024-11-20
- Peptides
- 2'-O-methyltransferase nsp16: A
Non-structural protein 10: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 1 x 01: 7-[(3~{S},4~{S},6~{R})-1-[(2~{S})-2-azanyl-3-(1~{H}-indol-3-yl)propanoyl]-4-methyl-4,6-bis(oxidanyl)azepan-3-yl]-1,3-dimethyl-purine-2,6-dione
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 1 x IMD: IMIDAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kremling, V. et al., Crystal structures of SARS-CoV-2 methyltransferase nsp10-16 with Cap0-site binders. To Be Published
- Release Date
- 2024-11-20
- Peptides
- 2'-O-methyltransferase nsp16: A
Non-structural protein 10: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B