SMTL ID : 9h02.1

Crystal structure of human CREBBP histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x 01K: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R,20R)-20-carbamoyl-3-hydroxy-2,2-dimethyl-4,8,14,22-tetraoxo-12-thia-5,9,15,21-tetraazatricos-1-yl dihydrogen diphosphate(Non-covalent)

01K.1: 24 residues within 4Å: Chain A: S.137, Y.138, L.139, D.140, S.141, R.148, R.151, T.152, Y.155, W.177, A.178, C.179, P.180, P.181, Y.187, Q.196, K.197, I.198, P.199, K.200, R.203, L.204, W.207, F.208 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:Y.138, A:Y.155, A:W.177, A:W.177, A:W.177, A:Y.187, A:L.204 Hydrogen bonds: A:Y.138, A:Y.138, A:L.139, A:L.139, A:S.141, A:R.151, A:W.177, A:C.179, A:Q.196, A:K.200, A:K.200, A:K.200 Water bridges: A:Y.138, A:R.148, A:R.151, A:R.151, A:Y.155, A:S.182, A:K.197, A:R.203, A:R.203, A:G.247 Salt bridges: A:R.148, A:R.151, A:R.151 pi-Cation interactions: A:R.203, A:R.203

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.223, Y.224, K.225 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.224, A:K.225 EDO.3: 3 residues within 4Å: Chain A: K.167, H.286, V.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.167, A:H.286 EDO.4: 8 residues within 4Å: Chain A: R.133, Q.230, A.231, D.234, L.236, E.241, L.242, P.243 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.133, A:Q.230, A:E.241 Water bridges: A:R.133, A:Q.230 EDO.5: 7 residues within 4Å: Chain A: H.175, I.227, L.242, P.243, F.245, D.248 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.248 EDO.6: 6 residues within 4Å: Chain A: K.209, D.226, K.277, E.278, F.280, F.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.209, A:E.278 EDO.7: 9 residues within 4Å: Chain A: H.175, I.176, W.177, D.248, W.250, F.280, F.281, V.282 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.248, A:F.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mechaly, A.E. et al., Crystal structure of human CREBBP histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA. To Be Published

Release Date

2025-10-15

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein