SMTL ID : 9h03.1

NMHase, dihydrouridine, 2.1A, CC_mask=0.7859

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.737, H.795, D.798, Q.820, R.1038 Ligands: DUC.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.737, A:H.795, A:D.798, A:D.798, H2O.1 CA.3: 6 residues within 4Å: Chain B: D.737, H.795, D.798, Q.820, R.1038 Ligands: DUC.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.737, B:H.795, B:D.798, B:D.798, H2O.1

2 x DUC: DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)

DUC.2: 12 residues within 4Å: Chain A: I.731, S.735, D.737, M.758, H.795, Q.820, R.1038, F.1039, I.1069, F.1071, V.1090 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.1069, A:F.1071 Hydrogen bonds: A:S.735, A:D.737, A:R.1038 DUC.4: 12 residues within 4Å: Chain B: I.731, S.735, D.737, M.758, H.795, Q.820, R.1038, F.1039, I.1069, F.1071, V.1090 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.1069, B:F.1071 Hydrogen bonds: B:S.735, B:D.737, B:R.1038

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toedtli, P. et al., NMHase, dihydrouridine, 2.1A, CC_mask=0.7859. To Be Published

Release Date

2025-10-15

Peptides

N-Methylhydantoinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-Methylhydantoinase