SMTL ID : 9h44.2 (1 other biounit)

Jumonji domain-containing protein 2B with crown ether and crystallization epitope mutations L916G:R917A:A918D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

2 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Covalent)

O4B.1: 10 residues within 4Å: Chain A: F.40, D.42, S.44, W.75, Y.81 Chain B: S.44, W.75 Ligands: CL.2, O4B.3, CL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.44 O4B.3: 10 residues within 4Å: Chain A: S.44, W.75 Chain B: F.40, D.42, S.44, W.75, Y.81 Ligands: O4B.1, CL.2, CL.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.44

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Ligands: O4B.1, O4B.3, CL.4 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Ligands: O4B.1, CL.2, O4B.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairhead, M. et al., A fast, parallel method for efficiently exploring crystallization behaviour of large numbers of protein variants. To Be Published

Release Date

2024-12-04

Peptides

Lysine-specific demethylase 4B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lysine-specific demethylase 4B

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