SMTL ID : 9h5h.1

MITF in complex with 1-(phenylethynyl)cyclohexan-1-ol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-trimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.43, R.46, E.47, R.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.43 Salt bridges: A:K.43, A:R.46, A:R.50 SO4.2: 4 residues within 4Å: Chain A: I.18, K.20, S.21, N.22 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.18, A:K.20, A:S.21, A:N.22, A:N.22, A:D.23 SO4.3: 2 residues within 4Å: Chain A: R.71 Chain B: Q.73 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.73 Salt bridges: A:R.71 SO4.4: 2 residues within 4Å: Chain B: R.71 Chain C: Q.73 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:Q.73 Salt bridges: B:R.71 SO4.5: 1 residues within 4Å: Chain B: H.67 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.67, B:R.71

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 7 residues within 4Å: Chain A: I.7 Chain B: M.26, R.27, W.28, N.29, K.30, G.31 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.30, B:G.31 Water bridges: B:T.32

1 x 01: 1-(2-phenylethynyl)cyclohexan-1-ol

01.7: 11 residues within 4Å: Chain A: L.44, E.47, Q.48, A.51 Chain B: L.44, E.47, Q.48, A.51 Chain C: R.50, A.51, L.54 7 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: C:R.50, C:L.54, A:E.47, A:Q.48, B:E.47, B:Q.48 Hydrogen bonds: C:A.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jahnke, W. et al., MITF in complex with 1-(phenylethynyl)cyclohexan-1-ol. To Be Published

Release Date

2025-11-05

Peptides

Isoform M1 of Microphthalmia-associated transcription factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Isoform M1 of Microphthalmia-associated transcription factor

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