SMTL ID : 9h6u.1

SARS-CoV-2 S protein in complex with pT1679 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: F.323, G.324, F.327, N.328, V.352, L.353, F.359 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.323, A:F.327, A:L.353 Hydrogen bonds: A:N.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stein, C.S. et al., A critical residue in a conserved RBD epitope determines neutralization breadth of pan-sarbecovirus antibodies. To be published

Release Date

2025-07-23

Peptides

Spike glycoprotein,Fibritin: A
pT1679 Fab heavy chain: B
pT1679 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein,Fibritin

pT1679 Fab heavy chain

pT1679 Fab light chain