SMTL ID : 9h8r.1

Crystal structure of Nkp46 in complex with a bicyclic peptide BCY00016132

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: R.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.125, A:R.125

1 x DHL: 2-AMINO-ETHANETHIOL(Non-covalent)

DHL.2: 4 residues within 4Å: Chain A: E.14, C.28, K.60, K.62 No protein-ligand interaction detected (PLIP)

1 x LFI: 1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one(Non-covalent)

LFI.3: 8 residues within 4Å: Chain A: P.15 Chain B: C.2, Y.3, X.4, L.8, C.9, A.10, C.14 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pellegrino, S. et al., Crystal structure of Nkp46 in complex with a bicyclic peptide BCY00016132. To Be Published

Release Date

2025-10-08

Peptides

Natural cytotoxicity triggering receptor 1: A
Bicyclic peptide BCY00016132: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Natural cytotoxicity triggering receptor 1

Bicyclic peptide BCY00016132