SMTL ID : 9h91.1

Cryo-EM structure of the Vibrio natrigens 50S ribosomal subunit in complex with the proline-rich antimicrobial peptide Bac5(1-17).

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.70 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain E: C.11, C.14, C.27, H.32 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.11, E:C.14, E:C.27, E:H.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raulf, K. et al., The structure of the Vibrio natriegens 70S ribosome in complex with the proline-rich antimicrobial peptide Bac5(1-17). Nucleic Acids Res. (2025)

Release Date

2025-05-21

Peptides

50S ribosomal protein L32: A
50S ribosomal protein L33: B
50S ribosomal protein L34: C
50S ribosomal protein L35: D
50S ribosomal protein L36: E
Cathelicidin-2: F
50S ribosomal protein L2: H
50S ribosomal protein L3: I
50S ribosomal protein L4: J
50S ribosomal protein L6: K
Large ribosomal subunit protein bL9: L
50S ribosomal protein L13: M
50S ribosomal protein L14: N
50S ribosomal protein L15: O
50S ribosomal protein L16: P
50S ribosomal protein L17: Q
50S ribosomal protein L18: R
50S ribosomal protein L19: S
50S ribosomal protein L20: T
50S ribosomal protein L21: U
50S ribosomal protein L22: V
50S ribosomal protein L23: W
50S ribosomal protein L24: X
50S ribosomal protein L25: Y
50S ribosomal protein L27: Z
50S ribosomal protein L28: 0
50S ribosomal protein L29: 1
50S ribosomal protein L30: 2

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
9

H
C

I
D

J
E

K
G

L
H

M
J

N
K

O
L

P
M

Q
N

R
O

S
P

T
Q

U
R

V
S

W
T

X
U

Y
V

Z
W

0
X

1
Y

2
Z

50S ribosomal protein L32

50S ribosomal protein L33

50S ribosomal protein L34

50S ribosomal protein L35

50S ribosomal protein L36

Cathelicidin-2

50S ribosomal protein L2

50S ribosomal protein L3

50S ribosomal protein L4

50S ribosomal protein L6

Large ribosomal subunit protein bL9

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

50S ribosomal protein L16

50S ribosomal protein L17

50S ribosomal protein L18

50S ribosomal protein L19

50S ribosomal protein L20

50S ribosomal protein L21

50S ribosomal protein L22

50S ribosomal protein L23

50S ribosomal protein L24

50S ribosomal protein L25

50S ribosomal protein L27

50S ribosomal protein L28

50S ribosomal protein L29

50S ribosomal protein L30