SMTL ID : 9h9t.1

Crystal structure of NEDD4 HECT domain in complex with covalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

1 x 01: ethyl 4-[4-(2-chloranyl-5,6-dihydrobenzo[b][1]benzazepin-11-yl)butylamino]butanoate

01.1: 12 residues within 4Å: Chain A: L.35, E.36, Y.39, P.85, Y.86, Y.87, G.88, L.89, C.109, N.110, Y.116, I.120 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.87, A:Y.116 Hydrogen bonds: A:C.109 pi-Stacking: A:Y.39, A:Y.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maspero, E. et al., Structure-based design of potent and selective inhibitors of the HECT ligase NEDD4. Commun Chem (2025)

Release Date

2025-06-04

Peptides

Isoform 4 of E3 ubiquitin-protein ligase NEDD4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 4 of E3 ubiquitin-protein ligase NEDD4

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