SMTL ID : 9hbk.1

Structure of A16/G9 in complex with A56/K2 (vaccinia virus)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 8 residues within 4Å: Chain A: Y.48, Y.49, E.50, T.51 Chain C: D.211, A.212, N.213, I.341 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.48

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 1 residues within 4Å: Chain C: N.223 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 1 residues within 4Å: Chain D: N.23 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain D: T.97, N.98 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meola, A. et al., Structural basis of poxvirus fusion regulation and anti-A16/G9 antibody-mediated neutralization and protection. Cell (2025)

Release Date

2025-09-03

Peptides

Virion membrane protein OPG143: A
Entry-fusion complex protein OPG094: B
Superinfection exclusion protein: C
Protein OPG185: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Virion membrane protein OPG143

Entry-fusion complex protein OPG094

Superinfection exclusion protein

Protein OPG185

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