SMTL ID : 9hel.1

Unliganded dimeric CD163 with arm-arm contacts

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain A: D.270, N.320 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 5 residues within 4Å: Chain B: D.270, G.271, V.272, N.320, L.393 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 2 residues within 4Å: Chain B: I.766, N.767 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.445 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: L.976, F.984, N.1027 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.984 Hydrogen bonds: A:N.1027 NAG.9: 3 residues within 4Å: Chain B: N.443, N.445, E.446 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.445

7 x CA: CALCIUM ION(Non-covalent)

CA.6: 5 residues within 4Å: Chain A: G.294, D.296, D.299, V.333, S.334 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.294, A:D.296, A:D.299, A:V.333 CA.7: 4 residues within 4Å: Chain A: D.955, D.956, E.1022 Chain B: K.811 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.955, A:D.956, A:E.1022 CA.8: 6 residues within 4Å: Chain A: S.957, D.959, D.962, V.996, K.997, C.998 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.959, A:D.962, A:D.962, A:V.996 CA.10: 5 residues within 4Å: Chain B: G.294, D.296, D.299, V.333, S.334 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:G.294, B:D.296, B:V.333 CA.11: 5 residues within 4Å: Chain B: S.747, D.749, D.752, M.786, K.787 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:S.747, B:D.749, B:D.752, B:D.752, B:M.786 CA.12: 3 residues within 4Å: Chain B: D.746, D.784, N.807 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.746, B:D.784, B:D.784 CA.13: 4 residues within 4Å: Chain A: E.981 Chain B: D.745, D.746, E.812 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.746, B:E.812

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, R.X. et al., Scavenger receptor CD163 multimerises to allow uptake of diverse ligands. To Be Published

Release Date

2025-07-02

Peptides

Scavenger receptor cysteine-rich type 1 protein M130: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Scavenger receptor cysteine-rich type 1 protein M130

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