SMTL ID : 9hfq.1

Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer without a ligand

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.129, C.154, C.157, E.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.129, A:C.154, A:C.157, A:E.177 ZN.2: 3 residues within 4Å: Chain A: H.418, C.446, C.449 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.418, A:C.446, A:C.449, H2O.1 ZN.3: 4 residues within 4Å: Chain B: H.129, C.154, C.157, E.177 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.129, B:C.154, B:C.157, B:E.177 ZN.4: 3 residues within 4Å: Chain B: H.418, C.446, C.449 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.418, B:C.446, B:C.449, H2O.1 ZN.5: 4 residues within 4Å: Chain C: H.129, C.154, C.157, E.177 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.129, C:C.154, C:C.157, C:E.177 ZN.6: 3 residues within 4Å: Chain C: H.418, C.446, C.449 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.418, C:C.446, C:C.449, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Slyvka, A. et al., Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer without a ligand. To Be Published (2025)

Release Date

2025-04-30

Peptides

Cytidine and dCMP deaminase domain-containing protein 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Cytidine and dCMP deaminase domain-containing protein 1

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