SMTL ID : 9hgg.1

SETD2 peptide bound to SPOP MATH domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 4 residues within 4Å: Chain A: T.12, I.13, N.14 Ligands: MG.3 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: T.89, K.90 No protein-ligand interaction detected (PLIP) MG.3: 5 residues within 4Å: Chain A: W.11, T.12, I.13, N.14 Ligands: MG.1 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: R.96, Y.98, W.106 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makhlouf, L. et al., Sequence rules for a long SPOP-binding degron required for protein ubiquitylation. Biochem.J. (2025)

Release Date

2025-04-23

Peptides

Speckle-type POZ protein: A
Histone-lysine N-methyltransferase SETD2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Speckle-type POZ protein

Histone-lysine N-methyltransferase SETD2