SMTL ID : 9hin.1

Crystal structure of human TRIM7 PRYSPRY domain bound to ((S)-2-(6-(6-methoxypyridin-3-yl)-1-oxoisoindolin-2-yl)-3-phenylpropanoyl)-L-glutamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 3 residues within 4Å: Chain A: N.102, C.165 Ligands: 01.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.102, A:N.102 Water bridges: A:F.90, A:C.165

1 x 01: ((S)-2-(6-(6-methoxypyridin-3-yl)-1-oxoisoindolin-2-yl)-3-phenylpropanoyl)-L-glutamine

01.2: 18 residues within 4Å: Chain A: R.18, L.30, E.32, T.46, N.47, T.48, R.49, G.72, W.73, A.74, L.87, F.90, Q.100, S.163, V.164, C.165, T.167 Ligands: TLA.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.30, A:T.48, A:A.74, A:F.90 Hydrogen bonds: A:T.48, A:G.72, A:Q.100, A:S.163, A:S.163, A:C.165 Water bridges: A:F.90, A:N.102 Salt bridges: A:R.49

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: S.69, Y.106, H.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lenz, C. et al., Crystal structure of human TRIM7 PRYSPRY domain bound to ((S)-2-(6-(6-methoxypyridin-3-yl)-1-oxoisoindolin-2-yl)-3-phenylpropanoyl)-L-glutamine. To Be Published

Release Date

2025-01-15

Peptides

E3 ubiquitin-protein ligase TRIM7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM7

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