SMTL ID : 9hjp.1

Improved structure of mouse Gasdermin D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: Y.55 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain B: F.45 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: P.25 Ligand excluded by PLIP

1 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.2: 5 residues within 4Å: Chain B: E.170, V.171, Q.172, I.173, T.174 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.172, B:T.174, B:T.174

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain B: E.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.72 NA.6: 2 residues within 4Å: Chain B: E.378, T.381 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.378, B:T.381 NA.7: 3 residues within 4Å: Chain B: S.270, L.271, E.272 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., Improved structure of mouse Gasdermin D. To Be Published

Release Date

2025-10-01

Peptides

Gasdermin-D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gasdermin-D