SMTL ID : 9hml.1

KIR2DL1 bound to RIFIN PfKE01_040007400

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 10 residues within 4Å: Chain A: E.60, N.63, S.65, S.66, L.68 Chain B: H.37, E.39, N.43, R.75, Y.77 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.63, A:S.65, B:Y.77, A:N.63, B:N.43 Water bridges: A:E.60, B:N.43

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain B: H.10, I.22, Q.24, N.60 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.10, B:Q.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chamberlain, S.G. et al., RIFINs displayed on malaria-infected erythrocytes bind both KIR2DL1 and KIR2DS1. To Be Published

Release Date

2025-04-09

Peptides

RIFIN PfKE01_040007400: A
KIR2DL protein: B
nanobody Nb1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RIFIN PfKE01_040007400

KIR2DL protein

nanobody Nb1