SMTL ID : 9hq6.1

Structural insights in the HuHf@gold-monocarbene adduct: aurophilicity revealed in a biological context

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 1.51 Å

Oligo State

homo-24-mer

Ligands

24 x BM0: 1-butyl-3-methyl-1H-imidazol-3-ium(Non-covalent)

BM0.1: 6 residues within 4Å: Chain A: N.98, E.101, C.102, H.105 Ligands: AU.2, AU.4 No protein-ligand interaction detected (PLIP) BM0.6: 6 residues within 4Å: Chain B: N.98, E.101, C.102, H.105 Ligands: AU.7, AU.9 No protein-ligand interaction detected (PLIP) BM0.11: 6 residues within 4Å: Chain C: N.98, E.101, C.102, H.105 Ligands: AU.12, AU.14 No protein-ligand interaction detected (PLIP) BM0.16: 6 residues within 4Å: Chain D: N.98, E.101, C.102, H.105 Ligands: AU.17, AU.19 No protein-ligand interaction detected (PLIP) BM0.21: 6 residues within 4Å: Chain E: N.98, E.101, C.102, H.105 Ligands: AU.22, AU.24 No protein-ligand interaction detected (PLIP) BM0.26: 6 residues within 4Å: Chain F: N.98, E.101, C.102, H.105 Ligands: AU.27, AU.29 No protein-ligand interaction detected (PLIP) BM0.31: 6 residues within 4Å: Chain G: N.98, E.101, C.102, H.105 Ligands: AU.32, AU.34 No protein-ligand interaction detected (PLIP) BM0.36: 6 residues within 4Å: Chain H: N.98, E.101, C.102, H.105 Ligands: AU.37, AU.39 No protein-ligand interaction detected (PLIP) BM0.41: 6 residues within 4Å: Chain I: N.98, E.101, C.102, H.105 Ligands: AU.42, AU.44 No protein-ligand interaction detected (PLIP) BM0.46: 6 residues within 4Å: Chain J: N.98, E.101, C.102, H.105 Ligands: AU.47, AU.49 No protein-ligand interaction detected (PLIP) BM0.51: 6 residues within 4Å: Chain K: N.98, E.101, C.102, H.105 Ligands: AU.52, AU.54 No protein-ligand interaction detected (PLIP) BM0.56: 6 residues within 4Å: Chain L: N.98, E.101, C.102, H.105 Ligands: AU.57, AU.59 No protein-ligand interaction detected (PLIP) BM0.61: 6 residues within 4Å: Chain M: N.98, E.101, C.102, H.105 Ligands: AU.62, AU.64 No protein-ligand interaction detected (PLIP) BM0.66: 6 residues within 4Å: Chain N: N.98, E.101, C.102, H.105 Ligands: AU.67, AU.69 No protein-ligand interaction detected (PLIP) BM0.71: 6 residues within 4Å: Chain O: N.98, E.101, C.102, H.105 Ligands: AU.72, AU.74 No protein-ligand interaction detected (PLIP) BM0.76: 6 residues within 4Å: Chain P: N.98, E.101, C.102, H.105 Ligands: AU.77, AU.79 No protein-ligand interaction detected (PLIP) BM0.81: 6 residues within 4Å: Chain Q: N.98, E.101, C.102, H.105 Ligands: AU.82, AU.84 No protein-ligand interaction detected (PLIP) BM0.86: 6 residues within 4Å: Chain R: N.98, E.101, C.102, H.105 Ligands: AU.87, AU.89 No protein-ligand interaction detected (PLIP) BM0.91: 6 residues within 4Å: Chain S: N.98, E.101, C.102, H.105 Ligands: AU.92, AU.94 No protein-ligand interaction detected (PLIP) BM0.96: 6 residues within 4Å: Chain T: N.98, E.101, C.102, H.105 Ligands: AU.97, AU.99 No protein-ligand interaction detected (PLIP) BM0.101: 6 residues within 4Å: Chain U: N.98, E.101, C.102, H.105 Ligands: AU.102, AU.104 No protein-ligand interaction detected (PLIP) BM0.106: 6 residues within 4Å: Chain V: N.98, E.101, C.102, H.105 Ligands: AU.107, AU.109 No protein-ligand interaction detected (PLIP) BM0.111: 6 residues within 4Å: Chain W: N.98, E.101, C.102, H.105 Ligands: AU.112, AU.114 No protein-ligand interaction detected (PLIP) BM0.116: 6 residues within 4Å: Chain X: N.98, E.101, C.102, H.105 Ligands: AU.117, AU.119 No protein-ligand interaction detected (PLIP)

96 x AU: GOLD ION(Non-covalent)

AU.2: 5 residues within 4Å: Chain A: N.98, E.101, C.102 Ligands: BM0.1, AU.4 Ligand excluded by PLIP AU.3: 6 residues within 4Å: Chain A: C.90, W.93, N.98, C.102 Ligands: AU.4, AU.5 Ligand excluded by PLIP AU.4: 5 residues within 4Å: Chain A: W.93, C.102 Ligands: BM0.1, AU.2, AU.3 Ligand excluded by PLIP AU.5: 3 residues within 4Å: Chain A: D.89, C.90 Ligands: AU.3 Ligand excluded by PLIP AU.7: 5 residues within 4Å: Chain B: N.98, E.101, C.102 Ligands: BM0.6, AU.9 Ligand excluded by PLIP AU.8: 6 residues within 4Å: Chain B: C.90, W.93, N.98, C.102 Ligands: AU.9, AU.10 Ligand excluded by PLIP AU.9: 5 residues within 4Å: Chain B: W.93, C.102 Ligands: BM0.6, AU.7, AU.8 Ligand excluded by PLIP AU.10: 3 residues within 4Å: Chain B: D.89, C.90 Ligands: AU.8 Ligand excluded by PLIP AU.12: 5 residues within 4Å: Chain C: N.98, E.101, C.102 Ligands: BM0.11, AU.14 Ligand excluded by PLIP AU.13: 6 residues within 4Å: Chain C: C.90, W.93, N.98, C.102 Ligands: AU.14, AU.15 Ligand excluded by PLIP AU.14: 5 residues within 4Å: Chain C: W.93, C.102 Ligands: BM0.11, AU.12, AU.13 Ligand excluded by PLIP AU.15: 3 residues within 4Å: Chain C: D.89, C.90 Ligands: AU.13 Ligand excluded by PLIP AU.17: 5 residues within 4Å: Chain D: N.98, E.101, C.102 Ligands: BM0.16, AU.19 Ligand excluded by PLIP AU.18: 6 residues within 4Å: Chain D: C.90, W.93, N.98, C.102 Ligands: AU.19, AU.20 Ligand excluded by PLIP AU.19: 5 residues within 4Å: Chain D: W.93, C.102 Ligands: BM0.16, AU.17, AU.18 Ligand excluded by PLIP AU.20: 3 residues within 4Å: Chain D: D.89, C.90 Ligands: AU.18 Ligand excluded by PLIP AU.22: 5 residues within 4Å: Chain E: N.98, E.101, C.102 Ligands: BM0.21, AU.24 Ligand excluded by PLIP AU.23: 6 residues within 4Å: Chain E: C.90, W.93, N.98, C.102 Ligands: AU.24, AU.25 Ligand excluded by PLIP AU.24: 5 residues within 4Å: Chain E: W.93, C.102 Ligands: BM0.21, AU.22, AU.23 Ligand excluded by PLIP AU.25: 3 residues within 4Å: Chain E: D.89, C.90 Ligands: AU.23 Ligand excluded by PLIP AU.27: 5 residues within 4Å: Chain F: N.98, E.101, C.102 Ligands: BM0.26, AU.29 Ligand excluded by PLIP AU.28: 6 residues within 4Å: Chain F: C.90, W.93, N.98, C.102 Ligands: AU.29, AU.30 Ligand excluded by PLIP AU.29: 5 residues within 4Å: Chain F: W.93, C.102 Ligands: BM0.26, AU.27, AU.28 Ligand excluded by PLIP AU.30: 3 residues within 4Å: Chain F: D.89, C.90 Ligands: AU.28 Ligand excluded by PLIP AU.32: 5 residues within 4Å: Chain G: N.98, E.101, C.102 Ligands: BM0.31, AU.34 Ligand excluded by PLIP AU.33: 6 residues within 4Å: Chain G: C.90, W.93, N.98, C.102 Ligands: AU.34, AU.35 Ligand excluded by PLIP AU.34: 5 residues within 4Å: Chain G: W.93, C.102 Ligands: BM0.31, AU.32, AU.33 Ligand excluded by PLIP AU.35: 3 residues within 4Å: Chain G: D.89, C.90 Ligands: AU.33 Ligand excluded by PLIP AU.37: 5 residues within 4Å: Chain H: N.98, E.101, C.102 Ligands: BM0.36, AU.39 Ligand excluded by PLIP AU.38: 6 residues within 4Å: Chain H: C.90, W.93, N.98, C.102 Ligands: AU.39, AU.40 Ligand excluded by PLIP AU.39: 5 residues within 4Å: Chain H: W.93, C.102 Ligands: BM0.36, AU.37, AU.38 Ligand excluded by PLIP AU.40: 3 residues within 4Å: Chain H: D.89, C.90 Ligands: AU.38 Ligand excluded by PLIP AU.42: 5 residues within 4Å: Chain I: N.98, E.101, C.102 Ligands: BM0.41, AU.44 Ligand excluded by PLIP AU.43: 6 residues within 4Å: Chain I: C.90, W.93, N.98, C.102 Ligands: AU.44, AU.45 Ligand excluded by PLIP AU.44: 5 residues within 4Å: Chain I: W.93, C.102 Ligands: BM0.41, AU.42, AU.43 Ligand excluded by PLIP AU.45: 3 residues within 4Å: Chain I: D.89, C.90 Ligands: AU.43 Ligand excluded by PLIP AU.47: 5 residues within 4Å: Chain J: N.98, E.101, C.102 Ligands: BM0.46, AU.49 Ligand excluded by PLIP AU.48: 6 residues within 4Å: Chain J: C.90, W.93, N.98, C.102 Ligands: AU.49, AU.50 Ligand excluded by PLIP AU.49: 5 residues within 4Å: Chain J: W.93, C.102 Ligands: BM0.46, AU.47, AU.48 Ligand excluded by PLIP AU.50: 3 residues within 4Å: Chain J: D.89, C.90 Ligands: AU.48 Ligand excluded by PLIP AU.52: 5 residues within 4Å: Chain K: N.98, E.101, C.102 Ligands: BM0.51, AU.54 Ligand excluded by PLIP AU.53: 6 residues within 4Å: Chain K: C.90, W.93, N.98, C.102 Ligands: AU.54, AU.55 Ligand excluded by PLIP AU.54: 5 residues within 4Å: Chain K: W.93, C.102 Ligands: BM0.51, AU.52, AU.53 Ligand excluded by PLIP AU.55: 3 residues within 4Å: Chain K: D.89, C.90 Ligands: AU.53 Ligand excluded by PLIP AU.57: 5 residues within 4Å: Chain L: N.98, E.101, C.102 Ligands: BM0.56, AU.59 Ligand excluded by PLIP AU.58: 6 residues within 4Å: Chain L: C.90, W.93, N.98, C.102 Ligands: AU.59, AU.60 Ligand excluded by PLIP AU.59: 5 residues within 4Å: Chain L: W.93, C.102 Ligands: BM0.56, AU.57, AU.58 Ligand excluded by PLIP AU.60: 3 residues within 4Å: Chain L: D.89, C.90 Ligands: AU.58 Ligand excluded by PLIP AU.62: 5 residues within 4Å: Chain M: N.98, E.101, C.102 Ligands: BM0.61, AU.64 Ligand excluded by PLIP AU.63: 6 residues within 4Å: Chain M: C.90, W.93, N.98, C.102 Ligands: AU.64, AU.65 Ligand excluded by PLIP AU.64: 5 residues within 4Å: Chain M: W.93, C.102 Ligands: BM0.61, AU.62, AU.63 Ligand excluded by PLIP AU.65: 3 residues within 4Å: Chain M: D.89, C.90 Ligands: AU.63 Ligand excluded by PLIP AU.67: 5 residues within 4Å: Chain N: N.98, E.101, C.102 Ligands: BM0.66, AU.69 Ligand excluded by PLIP AU.68: 6 residues within 4Å: Chain N: C.90, W.93, N.98, C.102 Ligands: AU.69, AU.70 Ligand excluded by PLIP AU.69: 5 residues within 4Å: Chain N: W.93, C.102 Ligands: BM0.66, AU.67, AU.68 Ligand excluded by PLIP AU.70: 3 residues within 4Å: Chain N: D.89, C.90 Ligands: AU.68 Ligand excluded by PLIP AU.72: 5 residues within 4Å: Chain O: N.98, E.101, C.102 Ligands: BM0.71, AU.74 Ligand excluded by PLIP AU.73: 6 residues within 4Å: Chain O: C.90, W.93, N.98, C.102 Ligands: AU.74, AU.75 Ligand excluded by PLIP AU.74: 5 residues within 4Å: Chain O: W.93, C.102 Ligands: BM0.71, AU.72, AU.73 Ligand excluded by PLIP AU.75: 3 residues within 4Å: Chain O: D.89, C.90 Ligands: AU.73 Ligand excluded by PLIP AU.77: 5 residues within 4Å: Chain P: N.98, E.101, C.102 Ligands: BM0.76, AU.79 Ligand excluded by PLIP AU.78: 6 residues within 4Å: Chain P: C.90, W.93, N.98, C.102 Ligands: AU.79, AU.80 Ligand excluded by PLIP AU.79: 5 residues within 4Å: Chain P: W.93, C.102 Ligands: BM0.76, AU.77, AU.78 Ligand excluded by PLIP AU.80: 3 residues within 4Å: Chain P: D.89, C.90 Ligands: AU.78 Ligand excluded by PLIP AU.82: 5 residues within 4Å: Chain Q: N.98, E.101, C.102 Ligands: BM0.81, AU.84 Ligand excluded by PLIP AU.83: 6 residues within 4Å: Chain Q: C.90, W.93, N.98, C.102 Ligands: AU.84, AU.85 Ligand excluded by PLIP AU.84: 5 residues within 4Å: Chain Q: W.93, C.102 Ligands: BM0.81, AU.82, AU.83 Ligand excluded by PLIP AU.85: 3 residues within 4Å: Chain Q: D.89, C.90 Ligands: AU.83 Ligand excluded by PLIP AU.87: 5 residues within 4Å: Chain R: N.98, E.101, C.102 Ligands: BM0.86, AU.89 Ligand excluded by PLIP AU.88: 6 residues within 4Å: Chain R: C.90, W.93, N.98, C.102 Ligands: AU.89, AU.90 Ligand excluded by PLIP AU.89: 5 residues within 4Å: Chain R: W.93, C.102 Ligands: BM0.86, AU.87, AU.88 Ligand excluded by PLIP AU.90: 3 residues within 4Å: Chain R: D.89, C.90 Ligands: AU.88 Ligand excluded by PLIP AU.92: 5 residues within 4Å: Chain S: N.98, E.101, C.102 Ligands: BM0.91, AU.94 Ligand excluded by PLIP AU.93: 6 residues within 4Å: Chain S: C.90, W.93, N.98, C.102 Ligands: AU.94, AU.95 Ligand excluded by PLIP AU.94: 5 residues within 4Å: Chain S: W.93, C.102 Ligands: BM0.91, AU.92, AU.93 Ligand excluded by PLIP AU.95: 3 residues within 4Å: Chain S: D.89, C.90 Ligands: AU.93 Ligand excluded by PLIP AU.97: 5 residues within 4Å: Chain T: N.98, E.101, C.102 Ligands: BM0.96, AU.99 Ligand excluded by PLIP AU.98: 6 residues within 4Å: Chain T: C.90, W.93, N.98, C.102 Ligands: AU.99, AU.100 Ligand excluded by PLIP AU.99: 5 residues within 4Å: Chain T: W.93, C.102 Ligands: BM0.96, AU.97, AU.98 Ligand excluded by PLIP AU.100: 3 residues within 4Å: Chain T: D.89, C.90 Ligands: AU.98 Ligand excluded by PLIP AU.102: 5 residues within 4Å: Chain U: N.98, E.101, C.102 Ligands: BM0.101, AU.104 Ligand excluded by PLIP AU.103: 6 residues within 4Å: Chain U: C.90, W.93, N.98, C.102 Ligands: AU.104, AU.105 Ligand excluded by PLIP AU.104: 5 residues within 4Å: Chain U: W.93, C.102 Ligands: BM0.101, AU.102, AU.103 Ligand excluded by PLIP AU.105: 3 residues within 4Å: Chain U: D.89, C.90 Ligands: AU.103 Ligand excluded by PLIP AU.107: 5 residues within 4Å: Chain V: N.98, E.101, C.102 Ligands: BM0.106, AU.109 Ligand excluded by PLIP AU.108: 6 residues within 4Å: Chain V: C.90, W.93, N.98, C.102 Ligands: AU.109, AU.110 Ligand excluded by PLIP AU.109: 5 residues within 4Å: Chain V: W.93, C.102 Ligands: BM0.106, AU.107, AU.108 Ligand excluded by PLIP AU.110: 3 residues within 4Å: Chain V: D.89, C.90 Ligands: AU.108 Ligand excluded by PLIP AU.112: 5 residues within 4Å: Chain W: N.98, E.101, C.102 Ligands: BM0.111, AU.114 Ligand excluded by PLIP AU.113: 6 residues within 4Å: Chain W: C.90, W.93, N.98, C.102 Ligands: AU.114, AU.115 Ligand excluded by PLIP AU.114: 5 residues within 4Å: Chain W: W.93, C.102 Ligands: BM0.111, AU.112, AU.113 Ligand excluded by PLIP AU.115: 3 residues within 4Å: Chain W: D.89, C.90 Ligands: AU.113 Ligand excluded by PLIP AU.117: 5 residues within 4Å: Chain X: N.98, E.101, C.102 Ligands: BM0.116, AU.119 Ligand excluded by PLIP AU.118: 6 residues within 4Å: Chain X: C.90, W.93, N.98, C.102 Ligands: AU.119, AU.120 Ligand excluded by PLIP AU.119: 5 residues within 4Å: Chain X: W.93, C.102 Ligands: BM0.116, AU.117, AU.118 Ligand excluded by PLIP AU.120: 3 residues within 4Å: Chain X: D.89, C.90 Ligands: AU.118 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cosottini, L. et al., Structural Insight Into a Human H Ferritin@Gold-Monocarbene Adduct: Aurophilicity Revealed in a Biological Context. Angew.Chem.Int.Ed.Engl. (2025)

Release Date

2025-05-07

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
V

V
W

W
X

X
Y

Ferritin heavy chain

Related Entries With Identical Sequence