SMTL ID : 9huh.1

CryoEM structure of human peptidylarginine deiminase type 4 (PAD4) in 10 mM calcium

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.96 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: F.420, L.423, E.424 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.423, A:E.424, A:E.424 CA.2: 3 residues within 4Å: Chain A: D.168, D.170, D.192 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.170, A:D.192 CA.3: 2 residues within 4Å: Chain A: N.166, E.265 No protein-ligand interaction detected (PLIP) CA.4: 3 residues within 4Å: Chain B: F.420, L.423, E.424 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:L.423, B:E.424 CA.5: 3 residues within 4Å: Chain B: D.168, D.170, D.192 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.170, B:D.192 CA.6: 1 residues within 4Å: Chain B: E.265 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bereta, G.P. et al., CryoEM structures of human peptidylarginine deiminase type 4 (PAD4). Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-10-22

Peptides

Protein-arginine deiminase type-4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein-arginine deiminase type-4

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