SMTL ID : 9i10.1

Human protein kinase CK2 alpha in complex with TN12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x 01: (2~{Z},5~{Z})-5-[(4-methoxy-3-oxidanyl-phenyl)methylidene]-2-(3-methylphenyl)imino-1,3-thiazolidin-4-one

01.1: 16 residues within 4Å: Chain A: G.44, R.45, G.46, S.49, V.51, V.64, K.66, I.93, F.111, E.112, H.113, V.114, N.116, M.161, I.172, D.173 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.51, A:V.64, A:I.93, A:I.172, A:I.172 Hydrogen bonds: A:K.66, A:V.114, A:D.173, A:D.173 Water bridges: A:S.49, A:S.49, A:W.174, A:W.174

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: D.251, R.276, R.304, Y.305, D.306 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.251, A:Y.305, A:D.306 Water bridges: A:D.251, A:R.304 Salt bridges: A:R.276, A:R.304 SO4.3: 4 residues within 4Å: Chain A: R.78, R.153, L.176, N.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.187 Water bridges: A:R.153 Salt bridges: A:R.78, A:R.153 SO4.4: 3 residues within 4Å: Chain A: R.189, K.196, N.236 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.236 Salt bridges: A:R.189, A:K.196

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: K.227, F.230, F.231, V.246, F.282 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.227, A:R.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cazzanelli, G. et al., Switching off CK2-mediated activation of survivin offers new therapeutic opportunities in neuroblastoma. To Be Published

Release Date

2025-02-26

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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