SMTL ID : 9i2y.1

Human DHODH in Complex with QC6352

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.216, V.218, H.219 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.216, A:H.219 SO4.4: 1 residues within 4Å: Chain A: R.131 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.131 SO4.5: 2 residues within 4Å: Chain A: K.198, R.202 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.198, A:R.202

1 x 9DJ: 3-[({(1R)-6-[methyl(phenyl)amino]-1,2,3,4-tetrahydronaphthalen-1-yl}methyl)amino]pyridine-4-carboxylic acid(Non-covalent)

9DJ.2: 17 residues within 4Å: Chain A: Y.9, L.13, M.14, Q.18, P.23, A.26, H.27, A.30, T.34, L.38, L.39, M.82, R.107, Y.327, L.330, T.331, P.335 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.9, A:L.13, A:A.26, A:A.30, A:L.39, A:T.331, A:P.335 Hydrogen bonds: A:Q.18, A:Y.327 Salt bridges: A:R.107

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: D.282, T.285, Q.286, R.289 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.282, A:Q.286 Water bridges: A:R.289 Salt bridges: A:R.289

1 x ORO: OROTIC ACID(Non-covalent)

ORO.6: 11 residues within 4Å: Chain A: K.71, N.116, Y.118, G.119, F.120, N.183, S.186, P.187, N.255, T.256 Ligands: FMN.7 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.120 Hydrogen bonds: A:N.116, A:N.116, A:G.119, A:F.120, A:N.183, A:N.255, A:N.255, A:T.256 Water bridges: A:S.91, A:F.120 Salt bridges: A:K.71

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.7: 24 residues within 4Å: Chain A: A.66, A.67, G.68, K.71, G.90, S.91, N.116, Y.118, N.152, N.183, K.226, T.254, N.255, T.256, S.276, G.277, L.280, V.304, G.305, G.306, L.326, Y.327, T.328 Ligands: ORO.6 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:N.116, A:Y.118, A:Y.327, A:Y.327 Hydrogen bonds: A:A.67, A:K.71, A:S.91, A:S.91, A:N.152, A:N.183, A:K.226, A:K.226, A:N.255, A:S.276, A:G.277, A:G.306, A:Y.327, A:T.328 Water bridges: A:A.67, A:G.305, A:V.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kraemer, A. et al., Human DHODH in Complex with QC6352. To Be Published

Release Date

2025-03-05

Peptides

Dihydroorotate dehydrogenase (quinone), mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase (quinone), mitochondrial