SMTL ID : 9i5a.1 (1 other biounit)

Crystal structure of wild type perlecan region 3 construct I876-V1272 construct including one laminin IV-like and four laminin EGF-like domains.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 5 residues within 4Å: Chain A: R.18, C.19, K.20, N.21, V.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.19

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: G.25, R.26, L.27, C.28, N.29, E.30 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.26, A:L.27, A:C.28, A:N.29 Water bridges: A:N.29, A:N.29 GOL.3: 9 residues within 4Å: Chain A: W.63, D.125, V.127, T.128, R.258, G.259, P.260, Q.263, D.264 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.258, A:Q.263 Water bridges: A:D.125, A:T.128 GOL.4: 6 residues within 4Å: Chain A: C.4, E.6, S.9, L.10, G.11, T.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sohail, A.A. et al., Structural insights on perlecan and Schwartz-Jampel syndrome. Matrix Biol. (2025)

Release Date

2025-04-02

Peptides

Basement membrane-specific heparan sulfate proteoglycan core protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Basement membrane-specific heparan sulfate proteoglycan core protein

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