SMTL ID : 9i5t.1

50S subunit of P. gingivalis ribosome with Lefamulin

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
139 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
1 x ZN: ZINC ION(Non-covalent)
1 x 62B: Lefamulin(Non-functional Binders)
18 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
15 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Hiregange, D.G. et al., Structural studies of ribosome from an anaerobic Bacteroidetes human pathogen Porphyromonas gingivalis. Nucleic Acids Res. (2025)
Release Date
2025-08-20
Peptides
Large ribosomal subunit protein bL28: A
Large ribosomal subunit protein uL29: B
Large ribosomal subunit protein uL5: C
Large ribosomal subunit protein bL31B: D
Large ribosomal subunit protein uL30: E
Large ribosomal subunit protein bL32: F
Large ribosomal subunit protein bL34: G
Large ribosomal subunit protein bL35: H
Large ribosomal subunit protein bL36: I
Large ribosomal subunit protein uL2: L
Large ribosomal subunit protein uL3: M
Large ribosomal subunit protein uL4: N
Large ribosomal subunit protein uL13: O
Large ribosomal subunit protein uL15: P
Large ribosomal subunit protein uL16: Q
Large ribosomal subunit protein bL17: R
Large ribosomal subunit protein uL18: S
Large ribosomal subunit protein bL19: T
Large ribosomal subunit protein bL20: U
Large ribosomal subunit protein bL21: V
Large ribosomal subunit protein uL22: W
Large ribosomal subunit protein uL23: X
Large ribosomal subunit protein uL24: Y
Large ribosomal subunit protein bL25: Z
Large ribosomal subunit protein bL27: 0
Large ribosomal subunit protein bL9: 1
DUF4295 domain-containing protein: 2
Large ribosomal subunit protein uL6: 3
Large ribosomal subunit protein uL14: 4
Large ribosomal subunit protein bL33: 5
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
11
D
12
E
2
F
4
G
6
H
7
I
8
L
D
M
E
N
F
O
M
P
O
Q
P
R
Q
S
R
T
S
U
T
V
U
W
V
X
W
Y
X
Z
Y
0
Z
1
h
2
15
3
13
4
N
5
5

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL5

Large ribosomal subunit protein bL31B

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

Large ribosomal subunit protein bL36

Large ribosomal subunit protein uL2

Large ribosomal subunit protein uL3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL15

Large ribosomal subunit protein uL16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

Large ribosomal subunit protein bL25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL9

DUF4295 domain-containing protein

Large ribosomal subunit protein uL6

Large ribosomal subunit protein uL14

Large ribosomal subunit protein bL33

Related Entries With Identical Sequence

9i5v.1 | 9i5x.1