SMTL ID : 9ic2.1

Structure of AMPK-alpha2-kinase domain bound to BAY-3827

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-[5-(3,5-dicyano-1,2,6-trimethyl-4~{H}-pyridin-4-yl)-6-fluoranyl-7-methyl-1~{H}-indazol-3-yl]-2-ethyl-benzamide

01.1: 20 residues within 4Å: Chain A: L.18, G.19, V.26, A.39, K.41, I.73, M.89, E.90, Y.91, V.92, S.93, G.95, E.96, N.140, L.142, A.152, N.158, M.160, S.161, D.162 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.39, A:I.73, A:M.89, A:Y.91, A:E.96, A:N.140, A:L.142, A:L.142, A:M.160 Hydrogen bonds: A:K.41, A:E.90, A:V.92, A:V.92, A:N.158

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: K.220 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain A: I.229, P.230, E.231, R.235 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:I.229

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: G.225, V.226, F.227, I.229, M.242 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.227, A:F.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahangar, M.S. et al., Structure of AMPK-alpha2-kinase domain bound to BAY-3827. To Be Published

Release Date

2025-09-03

Peptides

5'-AMP-activated protein kinase catalytic subunit alpha-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

5'-AMP-activated protein kinase catalytic subunit alpha-2