SMTL ID : 9ihq.1

Closed state with NUQM and without flavoprotein (classification state 2) of Pichia pastoris mitochondrial complex I in cMSP26 nanodiscs

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
21 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
5 x SF4: IRON/SULFUR CLUSTER(Non-covalent)(Covalent)
1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x K: POTASSIUM ION(Non-covalent)
21 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
5 x CDL: CARDIOLIPIN(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Lee, C.S. et al., Global conformations of Pichia pastoris complex I are distinguished by the binding of a unique interdomain bridging subunit. Sci Adv (2025)
Release Date
2025-10-15
Peptides
Altered inheritance of mitochondria protein 41, mitochondrial: A
NADH-ubiquinone oxidoreductase chain 3: B
BA75_00622T0: C
NUGM (30 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): D
NUCM (49 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): E
NUAM (75 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): F
NADH-ubiquinone oxidoreductase chain 1: G
NUIM (TYKY) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): H
NADH-ubiquinone oxidoreductase chain 6: I
NULM (ND4L) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): J
NADH-ubiquinone oxidoreductase chain 5: K
NADH-ubiquinone oxidoreductase chain 4: L
NADH-ubiquinone oxidoreductase chain 2: M
NUXM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): N
NUEM (39 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): O
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: P
NUMM (13 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): Q
NI8M (B8) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): R
Acyl carrier protein: S
Acyl carrier protein: T
NUFM (B13) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): U
BA75_04796T0: V
NADH-ubiquinone oxidoreductase: W
NUJM (B14.7) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: Z
NI9M (B9) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): 0
BA75_00589T0: 1
Pichia pastoris NADH-ubiquinone oxidoreductase subunit NEBM: 2
BA75_05084T0: 3
NUTM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): 4
NESM (ESSS) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): 5
NUSM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): 6
NUUM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): 7
Subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): 8
NB2M (B12) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): 9
NIAM (ASHI) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): a
NB5M (B15) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: d
NIDM (PDSW) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I): e
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit: f
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
1
B
A
C
B
D
C
E
D
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Y
Z
Z
a
0
b
1
c
2
d
3
e
4
f
5
g
6
h
7
i
8
j
9
k
a
l
b
m
c
n
d
o
e
p
f
q
Membrane
We predict this structure to be a membrane protein.

Altered inheritance of mitochondria protein 41, mitochondrial

NADH-ubiquinone oxidoreductase chain 3

BA75_00622T0

NUGM (30 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NUCM (49 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NUAM (75 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 1

NUIM (TYKY) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 6

NULM (ND4L) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NUXM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NUEM (39 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NUMM (13 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NI8M (B8) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

Acyl carrier protein

Acyl carrier protein

NUFM (B13) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

BA75_04796T0

NADH-ubiquinone oxidoreductase

NUJM (B14.7) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NI9M (B9) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

BA75_00589T0

Pichia pastoris NADH-ubiquinone oxidoreductase subunit NEBM

BA75_05084T0

NUTM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NESM (ESSS) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NUSM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NUUM subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

Subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NB2M (B12) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NIAM (ASHI) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NB5M (B15) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NIDM (PDSW) subunit of mitochondrial NADH:ubiquinone oxidoreductase (Complex I)

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

Related Entries With Identical Sequence

9iho.1 | 9ihp.1 | 9ihr.1