SMTL ID : 9ii5.1

Crystal structure of human TRIM21 PRYSPRY in complex with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-[(1-fluoranylcyclohexyl)methyl]-~{N}-methyl-4-(2-methylsulfanylphenyl)-2-methylsulfonyl-benzamide

01.1: 20 residues within 4Å: Chain A: Y.42, P.43, M.44, A.67, W.68, D.69, F.83, L.84, L.85, S.86, W.95, L.96, W.97, G.105, T.106, Y.107, Q.109, S.161, G.163, F.164 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.69, A:L.84, A:L.85, A:W.95, A:W.95 Hydrogen bonds: A:L.85 pi-Stacking: A:W.95, A:W.95 Halogen bonds: A:Q.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Chemically Induced Nuclear Pore Complex Protein Degradation via TRIM21. Acs Chem.Biol. (2025)

Release Date

2025-05-07

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM21