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SMTL ID : 9ijp.1

Polyphosphate bound alpha-synuclein fibril

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x 7TT: Tetraphosphate(Non-covalent)

7TT.1:	3 residues within 4Å: Chain A: K.60 Chain B: K.60 Chain C: K.60 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C Salt bridges: A:K.60, A:K.60, B:K.60, B:K.60, C:K.60, C:K.60
7TT.2:	3 residues within 4Å: Chain A: K.97 Chain B: K.97 Chain C: K.97 7 PLIP interactions: 2 interactions with chain C, 3 interactions with chain A, 2 interactions with chain B Salt bridges: C:K.97, C:K.97, A:K.97, A:K.97, A:K.97, B:K.97, B:K.97
7TT.3:	6 residues within 4Å: Chain A: K.43, K.45 Chain B: K.43, K.45 Chain C: K.43, K.45 11 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A, 3 interactions with chain C Salt bridges: B:K.43, B:K.43, B:K.45, A:K.43, A:K.43, A:K.45, A:K.45, A:K.45, C:K.43, C:K.45, C:K.45
7TT.4:	3 residues within 4Å: Chain D: K.60 Chain E: K.60 Chain F: K.60 6 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F, 2 interactions with chain E Salt bridges: D:K.60, D:K.60, F:K.60, F:K.60, E:K.60, E:K.60
7TT.5:	3 residues within 4Å: Chain D: K.97 Chain E: K.97 Chain F: K.97 7 PLIP interactions: 2 interactions with chain F, 3 interactions with chain D, 2 interactions with chain E Salt bridges: F:K.97, F:K.97, D:K.97, D:K.97, D:K.97, E:K.97, E:K.97
7TT.6:	6 residues within 4Å: Chain D: K.43, K.45 Chain E: K.43, K.45 Chain F: K.43, K.45 11 PLIP interactions: 3 interactions with chain F, 5 interactions with chain D, 3 interactions with chain E Salt bridges: F:K.43, F:K.45, F:K.45, D:K.43, D:K.43, D:K.45, D:K.45, D:K.45, E:K.43, E:K.43, E:K.45

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Tao, Y.Q. et al., Polyphosphate bound alpha-synuclein fibril. To Be Published

Release Date

2024-07-17

Peptides

Alpha-synuclein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

C
I

D
L

E
E

F
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Alpha-synuclein

Toggle Identical (ABCDEF)

Related Entries With Identical Sequence

1xq8.1 | 2kkw.1 | 2n0a.1 | 6cu7.1 | 6cu8.1 | 6l1t.1 | 6l1u.1 | 6osj.1 | 6osl.1 | 6osm.1 | 6rt0.1 | 6rtb.1 | 6sst.1 | 6ssx.1 | 6xyo.1 | 6xyp.1 | 6xyq.1 | 7c1d.1 | 7l7h.1 | 7nca.1 | 7nca.2 | 7ncg.1 | 7ncg.2 | 7nch.1 | 7nch.2 | 7nci.1 | 7nci.2 | 7ncj.1 | 7ncj.2 | 7nck.1 more...less...

7ozg.1 | 7ozh.1 | 7v47.1 | 7v48.1 | 7v49.1 | 7v4a.1 | 7v4b.1 | 7v4c.1 | 7v4d.1 | 7wmm.1 | 7xjx.1 | 7xo0.1 | 7xo1.1 | 7xo2.1 | 7xo3.1 | 7yk2.1 | 7yk8.1 | 7ynf.1 | 7yng.1 | 7ynl.1 | 7ynm.1 | 7ynn.1 | 7yno.1 | 7ynp.1 | 7ynq.1 | 7ynr.1 | 7yns.1 | 7ynt.1 | 8a4l.1 | 8a9l.1 | 8ads.1 | 8adu.1 | 8adv.1 | 8adw.1 | 8aex.1 | 8bqv.1 | 8bqw.1 | 8ce7.1 | 8ceb.1 | 8cyr.1 | 8cys.1 | 8cyt.1 | 8cyv.1 | 8cyw.1 | 8cyx.1 | 8cyy.1 | 8cz0.1 | 8cz1.1 | 8cz2.1 | 8cz3.1 | 8cz6.1 | 8fpt.1 | 8h03.1 | 8h04.1 | 8h05.1 | 8hzb.1 | 8hzc.1 | 8hzs.1 | 8jex.1 | 8jey.1 | 8oqi.1 | 8pix.1 | 8pk2.1 | 8pk4.1 | 8ri9.1 | 8rqm.1 | 8rrr.1 | 8uka.1 | 8zwi.1 | 8zwj.1 | 8zwk.1 | 9ck3.1 | 9cx6.1 | 9cx6.2 | 9euu.1 | 9fyp.1

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