SMTL ID : 9ijr.1

Cryo-EM structure of the orphan GPR52 beta-arrestin 1 complex bound to ligand c17

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x EN6: N-(2-hydroxyethyl)-5-(hydroxymethyl)-3-methyl-1-[2-[[3-(trifluoromethyl)phenyl]methyl]-1-benzothiophen-7-yl]pyrazole-4-carboxamide(Non-covalent)

EN6.1: 17 residues within 4Å: Chain A: G.32, H.33, Y.34, V.36, I.41, I.47, C.94, F.117, Y.185, H.186, D.188, I.189, F.190, A.194, P.296, F.300, T.303 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.36, A:I.41, A:I.47, A:D.188, A:I.189, A:F.300, A:F.300, A:F.300, A:T.303 Hydrogen bonds: A:H.33, A:Y.34 pi-Stacking: A:F.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, X. et al., Constitutive arrestin recruitment by orphan GPR52 via an atypical binding mode. Cell Res. (2025)

Release Date

2025-09-03

Peptides

G-protein coupled receptor 52: A
Beta-arrestin-1: B
scFv30 antibody: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
H

Membrane

We predict this structure to be a membrane protein.
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G-protein coupled receptor 52

Beta-arrestin-1

scFv30 antibody

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