SMTL ID : 9ijz.1

Wild type Homo sapiens Xenotropic and Polytropic Retrovirus Receptor 1 (XPR1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: D.398, N.401, K.482, Y.483, T.525, D.529, R.570, R.603, R.604 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.401, A:R.603 Salt bridges: A:K.482, A:R.570, A:R.604 PO4.3: 9 residues within 4Å: Chain B: D.398, N.401, K.482, Y.483, T.525, D.529, R.570, R.603, R.604 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.401, B:R.603 Salt bridges: B:K.482, B:R.570, B:R.604

2 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

6PL.2: 36 residues within 4Å: Chain A: I.271, G.274, G.275, L.278, F.281, L.282, L.285, T.289, W.292, H.299, F.303, L.305, N.306, S.309, N.310, L.311, L.316, I.319, L.323, Y.352, M.355, V.356, F.358, L.359, K.369, S.370, W.373, L.374, L.378, W.395, L.396, L.400, I.406, D.409, L.410, M.413 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.278, A:L.278, A:F.281, A:L.285, A:L.311, A:Y.352, A:Y.352, A:M.355, A:L.359, A:W.373, A:W.395, A:I.406, A:D.409 Hydrogen bonds: A:L.311, A:S.370 6PL.4: 36 residues within 4Å: Chain B: I.271, G.274, G.275, L.278, F.281, L.282, L.285, T.289, W.292, H.299, F.303, L.305, N.306, S.309, N.310, L.311, L.316, I.319, L.323, Y.352, M.355, V.356, F.358, L.359, K.369, S.370, W.373, L.374, L.378, W.395, L.396, L.400, I.406, D.409, L.410, M.413 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.278, B:L.278, B:F.281, B:L.285, B:L.311, B:Y.352, B:Y.352, B:M.355, B:L.359, B:W.373, B:W.395, B:I.406, B:D.409 Hydrogen bonds: B:L.311, B:S.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Q. et al., Structural basis of phosphate export by human XPR1. Nat Commun (2025)

Release Date

2025-01-22

Peptides

Solute carrier family 53 member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 53 member 1