SMTL ID : 9imb.1 (1 other biounit)

The crystal structure of human m5C methyltransferase NSUN6 bound to its S-adenosyl-L-methionine analog and a NECTIN-2 3'-UTR RNA substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 17 residues within 4Å: Chain A: L.241, C.242, A.243, A.244, P.245, G.247, K.248, D.266, K.267, K.271, F.292, D.293, G.294, D.323, A.324, P.325 Chain B: C.12 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.325 Hydrogen bonds: A:C.242, A:A.244, A:G.247, A:K.248, A:K.248, A:K.267, A:D.293, A:G.294, A:A.324 Salt bridges: A:K.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lv, M.Q. et al., NSUN6 inhibitor discovery guided by its mRNA substrate bound crystal structure. Structure (2025)

Release Date

2025-01-08

Peptides

tRNA (cytosine(72)-C(5))-methyltransferase NSUN6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

tRNA (cytosine(72)-C(5))-methyltransferase NSUN6

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