SMTL ID : 9inp.1 (1 other biounit)

Human Pin1 (Peptidyl-prolyl cis-trans isomerase) catalytic domain in complex with a covalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]-2-chloranyl-~{N}-(2,2-dimethylpropyl)-5-nitro-pyrimidin-4-amine

01.1: 11 residues within 4Å: Chain A: H.17, C.71, S.72, S.73, L.80, M.88, Q.89, F.92, S.112, H.115 Ligands: CIT.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.73

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 8 residues within 4Å: Chain A: K.21, R.27, S.29, D.70, C.71, S.72, S.112 Ligands: 01.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.27 Hydrogen bonds: A:R.27, A:D.70, A:S.72 Salt bridges: A:K.21, A:K.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, M. et al., Discovery of Novel Pyrimidine Derivatives as Human Pin1 Covalent Inhibitors. Acs Med.Chem.Lett. (2025)

Release Date

2025-05-14

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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