SMTL ID : 9iol.1

Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 12 residues within 4Å: Chain A: K.413, H.414, Y.416, T.480, K.481 Chain B: K.357, H.359, H.360, K.443, K.445 Chain E: K.4, K.6 20 PLIP interactions: 8 interactions with chain A, 9 interactions with chain B, 3 interactions with chain E Hydrogen bonds: A:Y.416, A:Y.416 Salt bridges: A:K.363, A:K.413, A:K.413, A:H.414, A:K.481, A:K.481, B:K.357, B:K.357, B:K.357, B:H.359, B:H.360, B:K.443, B:K.443, B:K.443, B:K.445, E:K.4, E:K.4, E:K.6

1 x 2OP: (2S)-2-HYDROXYPROPANOIC ACID(Covalent)

2OP.2: 4 residues within 4Å: Chain A: H.414, N.415 Chain B: K.451 Chain E: K.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, S., Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF. To Be Published

Release Date

2025-07-09

Peptides

X-ray repair cross-complementing protein 5: A
X-ray repair cross-complementing protein 6: B
Peptide from Non-homologous end-joining factor 1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
M

X-ray repair cross-complementing protein 5

X-ray repair cross-complementing protein 6

Peptide from Non-homologous end-joining factor 1

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