SMTL ID : 9ion.1

Cryo-EM structure of cUA bound CapE filament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 01: 3'3'-cUMP-AMP

01.1: 17 residues within 4Å: Chain A: R.129, P.135, M.136, I.137, F.138, K.139, A.145, H.146, G.147, R.148, F.152, S.153, G.155, F.156, F.202, D.206 Chain B: Q.262 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:K.139 Hydrogen bonds: A:P.135, A:I.137, A:K.139, A:K.139, A:H.146, A:H.146, A:G.147, A:S.153, A:S.153, A:G.155, A:F.156, A:F.202, A:D.206 Salt bridges: A:R.129 pi-Stacking: A:F.152, A:F.156, A:F.202 01.2: 20 residues within 4Å: Chain A: Q.262, L.263 Chain B: R.129, P.135, M.136, I.137, F.138, K.139, A.145, H.146, G.147, R.148, F.152, S.153, P.154, G.155, F.156, F.202, A.205, D.206 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.139 Hydrogen bonds: B:P.135, B:P.135, B:I.137, B:K.139, B:K.139, B:H.146, B:G.147, B:G.147, B:S.153, B:S.153, B:G.155, B:F.156, B:D.206, A:Q.262 Salt bridges: B:R.129, B:R.148 pi-Stacking: B:F.152, B:F.156 01.3: 19 residues within 4Å: Chain C: R.129, P.135, M.136, I.137, F.138, K.139, H.146, G.147, R.148, F.152, S.153, P.154, G.155, F.156, F.202, A.205, D.206 Chain D: Q.262, L.263 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:K.139 Hydrogen bonds: C:P.135, C:P.135, C:I.137, C:K.139, C:K.139, C:H.146, C:H.146, C:G.147, C:S.153, C:S.153, C:G.155, C:F.156, C:D.206, C:D.206 Salt bridges: C:R.129, C:R.148 pi-Stacking: C:F.152, C:F.156 01.4: 18 residues within 4Å: Chain C: Q.262 Chain D: F.58, R.129, P.135, M.136, I.137, F.138, K.139, A.145, H.146, G.147, R.148, F.152, S.153, G.155, F.156, F.202, D.206 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:K.139, D:F.152 Hydrogen bonds: D:P.135, D:P.135, D:I.137, D:K.139, D:K.139, D:H.146, D:H.146, D:G.147, D:G.147, D:S.153, D:S.153, D:G.155, D:F.156, D:F.202 Salt bridges: D:R.129 pi-Stacking: D:F.156, D:F.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Cyclic-dinucleotide-induced filamentous assembly of phospholipases governs broad CBASS immunity. Cell (2025)

Release Date

2025-05-21

Peptides

cUMP-AMP-activated phospholipase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

cUMP-AMP-activated phospholipase

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