SMTL ID : 9ipb.1

Local refinement structure of sEGFR and 528 Fv (from LH-type bispecific diabody Ex3) complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.93 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 11 residues within 4Å: Chain A: D.323, S.324, L.325, S.326, N.328, T.330, N.331, V.350, D.355, T.358, T.360 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.323 NAG-NAG.2: 4 residues within 4Å: Chain A: E.388, N.420, T.422, N.444 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: K.336, N.337 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.336 Hydrogen bonds: A:N.337 NAG.4: 2 residues within 4Å: Chain A: R.503, N.504 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sato, K. et al., Bispecific antibody-antigen complex structures reveal activity enhancement by domain rearrangement. Cell Rep (2025)

Release Date

2025-05-28

Peptides

Epidermal growth factor receptor: A
528 Fv from LH-type bispecific diabody Ex3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Epidermal growth factor receptor

528 Fv from LH-type bispecific diabody Ex3

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