SMTL ID : 9iqx.1

Cryo-EM structure of the human TRPV4-RhoA in complex with AH001

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-2-mer

Ligands

2 x P5S: O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine(Non-covalent)

P5S.1: 11 residues within 4Å: Chain A: F.324, I.326, N.327, S.330, Y.331, T.373, F.377, Y.406, R.447, L.449 Ligands: U6L.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.326, A:T.373 Hydrogen bonds: A:Y.406, A:Y.406, A:Y.406, A:R.447 P5S.3: 11 residues within 4Å: Chain C: F.324, I.326, N.327, S.330, Y.331, T.373, F.377, Y.406, R.447, L.449 Ligands: U6L.4 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.326, C:T.373 Hydrogen bonds: C:Y.406, C:Y.406, C:Y.406, C:R.447

2 x U6L: (1~{R})-1-(3-ethylphenyl)ethane-1,2-diol(Non-covalent)

U6L.2: 6 residues within 4Å: Chain A: N.327, T.380, Q.403, R.599, S.600 Ligands: P5S.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.380 Hydrogen bonds: A:Q.403, A:R.599, A:R.599 U6L.4: 6 residues within 4Å: Chain C: N.327, T.380, Q.403, R.599, S.600 Ligands: P5S.3 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:T.380 Hydrogen bonds: C:Q.403, C:R.599, C:R.599

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.5: 18 residues within 4Å: Chain E: D.13, G.14, A.15, C.16, G.17, K.18, T.19, C.20, F.30, V.35, T.37, K.118, D.120, L.121, S.160, A.161, K.162 Ligands: MG.6 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:A.15, E:C.16, E:G.17, E:K.18, E:T.19, E:T.19, E:C.20, E:K.118, E:A.161, E:K.162 Salt bridges: E:K.18, E:D.120 pi-Stacking: E:F.30 GDP.7: 18 residues within 4Å: Chain F: D.13, G.14, A.15, C.16, G.17, K.18, T.19, C.20, F.30, V.35, T.37, K.118, D.120, L.121, S.160, A.161, K.162 Ligands: MG.8 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:A.15, F:C.16, F:G.17, F:K.18, F:T.19, F:T.19, F:C.20, F:K.118, F:A.161, F:K.162 Salt bridges: F:K.18, F:D.120 pi-Stacking: F:F.30

2 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain E: T.19, T.37 Ligands: GDP.5 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:T.19, E:T.37 MG.8: 3 residues within 4Å: Chain F: T.19, T.37 Ligands: GDP.7 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:T.19, F:T.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J.W. et al., Inactivation of RhoA for hypertension treatment through a TRPV4-RhoA-RhoGDI1 axis. To Be Published

Release Date

2025-05-28

Peptides

Transient receptor potential cation channel subfamily V member 4: ABCD
Transforming protein RhoA: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 4

Transforming protein RhoA

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