SMTL ID : 9isu.2 (1 other biounit)

Crystal Structure of Cytochrome P450BM3 V-19A14 Mutant Heme Domain with N-Decanoyl-L-Homoserine Lactone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: K.69, L.75, L.86, F.87, W.96, I.153, F.261, A.264, T.268, T.269, L.272, T.327, A.328, F.331, P.392, F.393, G.394, R.398, A.399, C.400, I.401, G.402, A.406 Ligands: DMS.3 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:L.86, A:F.87, A:F.87, A:I.153, A:F.261, A:A.264, A:L.272, A:T.327, A:F.393, A:I.401, A:A.406 Hydrogen bonds: A:R.398 Water bridges: A:K.69, A:K.69, A:H.100, A:S.332, A:S.332, A:S.332, A:A.399 Salt bridges: A:K.69, A:R.398 Metal complexes: A:C.400

1 x HL0: N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide(Non-covalent)

HL0.2: 15 residues within 4Å: Chain A: L.20, V.25, V.26, L.29, W.47, L.49, Y.51, S.72, G.73, V.74, F.87, P.188, A.330, M.354, L.437 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.20, A:V.25, A:L.29, A:W.47, A:F.87, A:L.437 Hydrogen bonds: A:Y.51, A:G.73, A:V.74

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: F.87, A.264, T.268 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.87

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: W.130, E.131, L.133, N.134, A.135, A.448, K.449, S.450 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.131, A:N.134, A:S.450 Water bridges: A:S.450 GOL.5: 5 residues within 4Å: Chain A: R.147, L.150, P.170, I.174, H.266 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, Y. et al., Bacterial Acyl Homoserine Lactones Triggered Non-Native Substrate Hydroxylation Catalyzed by Directed-Evolution-Derived Cytochrome P450BM3 Mutants. Chemcatchem (2024)

Release Date

2024-12-04

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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