SMTL ID : 9it0.1

Liganded-state E.coli PatZ

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.1: 25 residues within 4Å: Chain A: I.18, G.19, S.21, K.23, R.26, A.27, V.47, T.48, P.49, A.50, W.51, C.76, T.77, N.78, R.81, L.85, L.100, S.101, N.125, S.126, L.127, F.140, A.157 Chain B: D.344, D.345 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.19, A:S.21, A:W.51, A:N.78, A:N.78 Water bridges: A:T.48, A:R.81 Salt bridges: A:K.23, A:R.26, A:R.26, A:R.26, A:R.81 ACO.2: 26 residues within 4Å: Chain A: D.750, Y.753, R.754, F.810, A.811, V.812, L.813, V.814, K.819, G.820, L.821, G.822, L.823, G.824, R.825, G.845, I.846, T.847, N.851, R.852, G.853, M.854, A.856, L.857, K.860, L.876 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.813 Hydrogen bonds: A:V.812, A:V.812, A:V.814, A:G.820, A:G.822, A:L.823, A:G.824, A:R.825, A:N.851, A:K.860 Salt bridges: A:R.825, A:K.860 ACO.3: 24 residues within 4Å: Chain A: D.345 Chain B: I.18, G.19, S.21, K.23, R.26, A.27, V.47, T.48, P.49, A.50, W.51, C.76, T.77, N.78, R.81, L.85, L.100, S.101, N.125, S.126, L.127, F.140, A.157 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.21, B:W.51, B:N.78, B:N.78 Water bridges: B:R.26, B:T.48 Salt bridges: B:K.23, B:R.26, B:R.26, B:R.26, B:R.81 ACO.4: 26 residues within 4Å: Chain B: K.721, D.750, Y.753, R.754, F.810, A.811, V.812, L.813, V.814, K.819, G.820, G.822, L.823, G.824, R.825, G.845, I.846, T.847, N.851, R.852, G.853, M.854, A.856, L.857, K.860, L.876 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.810, B:L.813 Hydrogen bonds: B:V.812, B:V.812, B:V.814, B:K.819, B:G.822, B:L.823, B:G.824, B:R.825, B:N.851 Water bridges: B:L.821 Salt bridges: B:R.825, B:K.860 ACO.7: 25 residues within 4Å: Chain C: I.18, G.19, S.21, K.23, R.26, A.27, V.47, T.48, P.49, A.50, W.51, C.76, T.77, N.78, R.81, L.85, L.100, S.101, N.125, S.126, L.127, F.140, A.157 Chain D: D.344, D.345 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.21, C:W.51, C:N.78, C:N.78 Water bridges: C:A.27, C:T.48 Salt bridges: C:K.23, C:R.26, C:R.26, C:R.26, C:R.81 ACO.8: 26 residues within 4Å: Chain C: D.750, Y.753, R.754, F.810, A.811, V.812, L.813, V.814, K.819, G.820, L.821, G.822, L.823, G.824, R.825, G.845, I.846, T.847, N.851, R.852, G.853, M.854, A.856, L.857, K.860, L.876 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:F.810, C:L.813 Hydrogen bonds: C:V.812, C:V.814, C:K.819, C:G.822, C:G.822, C:L.823, C:G.824, C:R.825, C:N.851 Water bridges: C:L.821 Salt bridges: C:R.825, C:K.860 ACO.11: 23 residues within 4Å: Chain C: D.344, D.345 Chain D: I.18, G.19, S.21, K.23, R.26, A.27, V.47, T.48, P.49, A.50, W.51, C.76, T.77, N.78, R.81, L.85, L.100, S.101, L.127, F.140, A.157 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:L.127 Hydrogen bonds: D:S.21, D:W.51, D:N.78, D:N.78 Water bridges: D:R.26, D:R.26, D:T.48, D:R.81, D:R.81, D:R.81 Salt bridges: D:K.23, D:R.26, D:R.26, D:R.26, D:R.81 ACO.12: 26 residues within 4Å: Chain D: K.721, D.750, Y.753, R.754, F.810, A.811, V.812, L.813, V.814, K.819, G.820, L.821, G.822, L.823, G.824, R.825, G.845, I.846, T.847, N.851, R.852, G.853, M.854, A.856, L.857, K.860 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:F.810, D:V.812, D:L.813 Hydrogen bonds: D:V.812, D:V.814, D:G.820, D:G.822, D:L.823, D:G.824, D:R.825, D:I.846, D:N.851 Water bridges: D:L.821 Salt bridges: D:K.721, D:R.825, D:K.860

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 7 residues within 4Å: Chain A: S.156, A.157, A.158 Chain B: G.297, A.298, A.299, D.344 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.156, A:A.157, A:A.158, B:A.298, B:A.299, B:D.344 PO4.6: 7 residues within 4Å: Chain A: G.297, A.298, A.299, D.344 Chain B: S.156, A.157, A.158 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.156, B:S.156, B:S.156, B:A.157, B:A.158, A:A.298, A:A.299 Water bridges: A:R.343 PO4.9: 8 residues within 4Å: Chain C: S.156, A.157, A.158 Chain D: G.297, A.298, A.299, R.343, D.344 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:A.298, D:A.299, D:R.343, D:R.343, D:D.344, C:S.156, C:A.157, C:A.158 PO4.10: 8 residues within 4Å: Chain C: G.297, A.298, A.299, R.343, D.344 Chain D: S.156, A.157, A.158 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:S.156, D:S.156, D:A.157, D:A.158, C:A.298, C:A.299, C:R.343

Links

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Citation

Park, J.B. et al., Structural basis of the catalytic and allosteric mechanism of bacterial acetyltransferase PatZ. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-06-04

Peptides

Protein acetyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protein acetyltransferase